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  5. Dcu_g43241

Dcu_g43241


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g43241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00107400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.04 OrthoFinder output from all 47 species
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17771 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g09212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g58851 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g40546 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18871 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17591.t1 Aspi01Gene17591 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene37396.t1 Aspi01Gene37396 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000557 OTP86 not classified & original description: CDS=1-2739 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000996 OTP84 not classified & original description: CDS=1-3012 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036353 No alias not classified & original description: CDS=1-2463 0.03 OrthoFinder output from all 47 species
Azfi_s0229.g059121 CRR22 not classified & original description: CDS=1-2070 0.04 OrthoFinder output from all 47 species
Azfi_s0515.g074972 No alias not classified & original description: CDS=1-2211 0.03 OrthoFinder output from all 47 species
Cba_g67468 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75350 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.06G074600.1 Ceric.06G074600 not classified & original description: pacid=50619733... 0.04 OrthoFinder output from all 47 species
Dde_g04006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g47962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01024606001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 OrthoFinder output from all 47 species
Gb_33545 CRR22 RNA editing factor (MEF3) 0.04 OrthoFinder output from all 47 species
LOC_Os03g43420.1 OSB1, LOC_Os03g43420 ssDNA-binding protein (OSB) 0.05 OrthoFinder output from all 47 species
LOC_Os03g58100.1 OTP85, LOC_Os03g58100 RNA editing factor (OTP85) 0.04 OrthoFinder output from all 47 species
Len_g03880 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17789 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56586 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g00934 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
MA_82569g0020 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Msp_g03994 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28092 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g47591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g18275 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g21989 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g22892 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g10372 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43621 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03361 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03395 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g05441 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g46650 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57077 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57665 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63473 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g63502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05294 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29430 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53730 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g007850.2.1 Solyc01g007850 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc12g006575.1.1 OTP82, Solyc12g006575 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Tin_g11538 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g16670 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g23001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31642 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g34486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003605_P001 DOT4, Zm00001e003605 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.04 OrthoFinder output from all 47 species
Zm00001e011467_P004 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.05 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 828 872
IPR002885 Pentatricopeptide_repeat 585 607
IPR002885 Pentatricopeptide_repeat 149 174
IPR002885 Pentatricopeptide_repeat 786 809
IPR002885 Pentatricopeptide_repeat 382 403
IPR002885 Pentatricopeptide_repeat 710 758
IPR002885 Pentatricopeptide_repeat 508 556
IPR002885 Pentatricopeptide_repeat 408 455
IPR002885 Pentatricopeptide_repeat 205 253
IPR002885 Pentatricopeptide_repeat 610 657
IPR002885 Pentatricopeptide_repeat 307 354
No external refs found!