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  5. Dcu_g43300

Dcu_g43300


Description : helicase UAP56 & original description: none


Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g43300
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00225190 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
Cre17.g719000 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
LOC_Os01g36920.2 LOC_Os01g36920 RNA helicase (Sub2). helicase component UAP56 of... 0.04 OrthoFinder output from all 47 species
Mp1g02350.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.05 OrthoFinder output from all 47 species
Pp3c7_5890V3.1 Pp3c7_5890 DEAD/DEAH box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Solyc06g066060.3.1 Solyc06g066060 RNA helicase (Sub2). helicase component UAP56 of... 0.04 OrthoFinder output from all 47 species
Solyc08g061000.4.1 Solyc08g061000 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
Zm00001e027715_P001 Zm00001e027715 RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 107 272
No external refs found!