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  5. Dcu_g45925

Dcu_g45925


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g45925
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00062590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00056p00185560 VAC1, ECB2, ATECB2 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.02 OrthoFinder output from all 47 species
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g23767 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12943 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17237 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g23793 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g26222 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27705 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g31160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36544 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36933 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g39266 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07100 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07424 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26644 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26698 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g29342 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47303 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07004 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09405 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09867 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18405 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33022 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g33058 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g35630 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024817 No alias not classified & original description: CDS=20-3643 0.03 OrthoFinder output from all 47 species
Azfi_s0168.g054598 No alias not classified & original description: CDS=1-1869 0.02 OrthoFinder output from all 47 species
Cba_g24198 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67033 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75238 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G084700.1 VAC1, ECB2,... not classified & original description: pacid=50592179... 0.04 OrthoFinder output from all 47 species
Ceric.02G047700.1 Ceric.02G047700 not classified & original description: pacid=50586056... 0.04 OrthoFinder output from all 47 species
Ceric.10G013000.1 EMB2758, Ceric.10G013000 not classified & original description: pacid=50613337... 0.04 OrthoFinder output from all 47 species
Ceric.14G074100.1 Ceric.14G074100 not classified & original description: pacid=50633188... 0.03 OrthoFinder output from all 47 species
Ceric.19G000700.1 VAC1, ECB2,... not classified & original description: pacid=50576122... 0.03 OrthoFinder output from all 47 species
Ceric.26G013000.1 Ceric.26G013000 not classified & original description: pacid=50600010... 0.04 OrthoFinder output from all 47 species
Ceric.27G011400.1 Ceric.27G011400 not classified & original description: pacid=50605728... 0.03 OrthoFinder output from all 47 species
Dac_g09645 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04808 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08084 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g23638 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43330 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45932 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03951 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g04879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16502 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19625 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28218 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28696 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g36375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g41697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g44017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_15639 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_32439 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_36806 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Gb_38249 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
LOC_Os01g62910.1 CRR2, LOC_Os01g62910 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
LOC_Os03g59264.1 LOC_Os03g59264 lectin chaperone (CRT) 0.03 OrthoFinder output from all 47 species
LOC_Os05g12130.1 EMB2261, LOC_Os05g12130 RNA editing factor (ECD1) 0.04 OrthoFinder output from all 47 species
LOC_Os05g49920.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.04 OrthoFinder output from all 47 species
LOC_Os06g08650.1 LOC_Os06g08650 Pentatricopeptide repeat-containing protein At2g03380,... 0.03 OrthoFinder output from all 47 species
LOC_Os06g08660.1 LOC_Os06g08660 Pentatricopeptide repeat-containing protein At4g30700... 0.05 OrthoFinder output from all 47 species
LOC_Os08g06490.2 SLO1, LOC_Os08g06490 Pentatricopeptide repeat-containing protein At4g22760... 0.03 OrthoFinder output from all 47 species
Len_g04816 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18022 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07688 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05468 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10444 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20618 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g32044 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08941 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20793 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40943 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43621 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64875 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06505 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06944 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g07618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18601 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g29289 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g44848 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g45354 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g45382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48495 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g53028 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53200 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g55201 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g23704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05566 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13752 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.04 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Zm00001e015440_P001 CRR22, Zm00001e015440 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Zm00001e015727_P001 Zm00001e015727 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Zm00001e016923_P001 CRR2, Zm00001e016923 Pentatricopeptide repeat-containing protein At3g46790,... 0.02 OrthoFinder output from all 47 species
Zm00001e020442_P001 Zm00001e020442 Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.03 OrthoFinder output from all 47 species
Zm00001e041048_P001 OTP86, Zm00001e041048 RNA editing factor (OTP86) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 378 424
IPR002885 Pentatricopeptide_repeat 276 323
IPR002885 Pentatricopeptide_repeat 75 121
IPR002885 Pentatricopeptide_repeat 176 222
IPR002885 Pentatricopeptide_repeat 352 374
IPR002885 Pentatricopeptide_repeat 150 173
IPR002885 Pentatricopeptide_repeat 49 71
No external refs found!