Dcu_g46245

Description : component *(eL40) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g46245

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00094950	UBQ6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00040p00104050	evm_27.TU.AmTr_v1...	Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris	0.02	OrthoFinder output from all 47 species
AT1G23410	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.03	OrthoFinder output from all 47 species
AT2G36170	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.05	OrthoFinder output from all 47 species
AT2G47110	UBQ6	ubiquitin 6	0.04	OrthoFinder output from all 47 species
AT3G52590	UBQ1, EMB2167,...	ubiquitin extension protein 1	0.04	OrthoFinder output from all 47 species
AT3G62250	UBQ5	ubiquitin 5	0.03	OrthoFinder output from all 47 species
Adi_g023730	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g28227	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene44628.t1	RUB1, ATRUB1,...	RUB ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.22G050200.1	UBQ6, Ceric.22G050200	component *(eS31) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.27G040600.1	Ceric.27G040600	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cre01.g007051	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Cre06.g273600	UBQ6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
GSVIVT01012906001	No alias	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01033876001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01038617001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Gb_15027	UBQ6	component RPS27a of SSU proteome	0.04	OrthoFinder output from all 47 species
Gb_40288	UBQ6	component RPS27a of SSU proteome	0.04	OrthoFinder output from all 47 species
Gb_41257	No alias	component RPL40 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os05g06770.1	UBQ6, LOC_Os05g06770	component RPS27a of SSU proteome	0.04	OrthoFinder output from all 47 species
Len_g04120	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Len_g14648	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Len_g14649	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
MA_10435699g0020	UBQ6	component RPS27a of SSU proteome	0.02	OrthoFinder output from all 47 species
MA_529552g0010	UBQ6	component RPS27a of SSU proteome	0.05	OrthoFinder output from all 47 species
Mp8g00780.1	No alias	component RPL40 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Msp_g06697	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c12_5640V3.1	UBQ6, Pp3c12_5640	ubiquitin 6	0.04	OrthoFinder output from all 47 species
Pp3c20_23170V3.1	Pp3c20_23170	ubiquitin extension protein 1	0.03	OrthoFinder output from all 47 species
Pp3c4_19000V3.1	UBQ6, Pp3c4_19000	ubiquitin 6	0.03	OrthoFinder output from all 47 species
Sam_g07359	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g07360	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Solyc03g082570.4.1	Solyc03g082570	component RPL40 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Solyc08g083120.3.1	Solyc08g083120	component RPL40 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e009474_P001	Zm00001e009474	component RPL40 of LSU proteome component	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000030	mannosyltransferase activity	IEP	HCCA
CC	GO:0000139	Golgi membrane	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
CC	GO:0000775	chromosome, centromeric region	IEP	HCCA
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	HCCA
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	HCCA
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0019207	kinase regulator activity	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
MF	GO:0019887	protein kinase regulator activity	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
CC	GO:0098687	chromosomal region	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
BP	GO:1901264	carbohydrate derivative transport	IEP	HCCA
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	32	103
IPR001975	Ribosomal_L40e	107	156

External Links

No external refs found!

Dcu_g46245

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation