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  5. Aspi01Gene12870.t1

Aspi01Gene12870.t1 (Aspi01Gene12870)


Aliases : Aspi01Gene12870

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene12870.t1
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
Ala_g17651 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39237 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g37552 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g69297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023921 No alias not classified & original description: CDS=1-2157 0.01 OrthoFinder output from all 47 species
Cba_g16716 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.15G077400.1 Ceric.15G077400 not classified & original description: pacid=50640137... 0.01 OrthoFinder output from all 47 species
Dac_g05513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g40815 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g08760 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g05920 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25197 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g63560.1 LOC_Os03g63560 OTP70 plastidial RNA splicing factor 0.01 OrthoFinder output from all 47 species
Len_g40700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16581 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g31355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35187 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g22363 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g28692 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g35189 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09710 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g17545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27956 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17858 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g27030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g33469 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11747 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05733 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06477 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12921 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13349 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g21972 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014482 No alias not classified & original description: CDS=1-1119 0.03 OrthoFinder output from all 47 species
Sam_g25339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27677 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g29286 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo126194 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 OrthoFinder output from all 47 species
Spa_g10134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14145 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26191 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g28110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g43840 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g44833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g45261 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55537 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e007462_P001 Zm00001e007462 Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
Zm00001e035817_P001 Zm00001e035817 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 218 262
IPR002885 Pentatricopeptide_repeat 420 468
IPR002885 Pentatricopeptide_repeat 319 367
IPR002885 Pentatricopeptide_repeat 622 670
IPR002885 Pentatricopeptide_repeat 522 569
IPR002885 Pentatricopeptide_repeat 116 163
IPR002885 Pentatricopeptide_repeat 723 771
IPR002885 Pentatricopeptide_repeat 798 823
IPR032867 DYW_dom 950 1033
IPR046848 E_motif 841 902
No external refs found!