Aspi01Gene16597.t1 (PKL, GYM, CHR6, SSL2,...)

Aliases : PKL, GYM, CHR6, SSL2, CHD3, Aspi01Gene16597

Description : not classified & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene16597.t1

Target	Alias	Description	ECC score	Gene Family Method
Ala_g36219	ATCHR12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g16533	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g22693	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.04	OrthoFinder output from all 47 species
Aob_g29249	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Aop_g05323	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0129.g048917	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ceric.1Z205000.1	PKR1, CHR4,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000128.11	CHR17	ISWI chromatin-remodeling complex ATPase CHR17...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000217.25	SYD, CHR3	Chromatin structure-remodeling complex protein SYD...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021275.25	CHR11	Probable chromatin-remodeling complex ATPase chain...	0.02	OrthoFinder output from all 47 species
Dcu_g03216	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Dcu_g42511	PKL, GYM, CHR6,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g08436	CHR5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01018218001	No alias	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Len_g29294	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Lfl_g02374	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g26680.1	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder output from all 47 species
Msp_g13222	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g12025	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ore_g04808	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g29874	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.05	OrthoFinder output from all 47 species
Ppi_g13843	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007981	PKL, GYM, CHR6,...	WRKY-type transcription factor & original description: CDS=1-4410	0.03	OrthoFinder output from all 47 species
Sam_g17473	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g29292	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Sam_g49524	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g14271	PKL, GYM, CHR6,...	CHD3-type chromaTin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Zm00001e030969_P003	SYD, CHR3, Zm00001e030969	chromatin remodeling factor (Snf2)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR023780	Chromo_domain	468	515
IPR000330	SNF2_N	539	824
IPR001650	Helicase_C	863	973

External Links

No external refs found!

Aspi01Gene16597.t1 (PKL, GYM, CHR6, SSL2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation