Aspi01Gene18101.t1 (ATRZ-1A, Aspi01Gene18101)

Aliases : ATRZ-1A, Aspi01Gene18101

Description : RNA chaperone *(RZ1) & original description: none

Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene18101.t1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g062721	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Azfi_s0116.g046316	GRP2, ATGRP2, GR-RBP2	RNA editing factor *(ORRM3) & original description: CDS=161-592	0.03	OrthoFinder output from all 47 species
Ehy_g16014	GR-RBP4, GRP4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g30812	GR-RBP4, GRP4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g23738	No alias	RNA chaperone *(RZ1) & original description: none	0.01	OrthoFinder output from all 47 species
Ppi_g57632	CCR2, ATGRP7,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g26696	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g26697	No alias	RNA chaperone *(RZ1) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g52143	No alias	RNA chaperone *(RZ1) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e028502_P003	Zm00001e028502	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	414	430
IPR000504	RRM_dom	321	389

External Links

No external refs found!