Aspi01Gene19451.t1 (SOC1, AGL20, ATSOC1,...)

Aliases : SOC1, AGL20, ATSOC1, Aspi01Gene19451

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene19451.t1

Target	Alias	Description	ECC score	Gene Family Method
AT2G22540	SVP, AGL22	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.02	OrthoFinder output from all 47 species
AT4G37940	AGL21	AGAMOUS-like 21	0.03	OrthoFinder output from all 47 species
AT5G15800	AGL2, SEP1	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.04	OrthoFinder output from all 47 species
Als_g11193	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g51470	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g61790	AGL6	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g40548	AGL13	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g04967	AGL21	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g16031	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g47174	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.12G051800.1	GL19, AGL19,...	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dde_g10603	AGL42	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g50123	AGL3, SEP4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g21427	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009171001	SVP, AGL22	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01009393001	AGL104	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01010521001	AGL9, SEP3	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01018446001	AGL42	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01038474001	AGL16	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
LOC_Os02g45770.1	AGL6, LOC_Os02g45770	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os03g54170.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Len_g17248	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g52703	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g08300	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g33207	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_10289256g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_19296g0010	AGL9, SEP3	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_6279308g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_75656g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_9544285g0010	AGL42	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Msp_g39561	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g18297	AGL21	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g28516	AGL66	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g42768	AGL8, FUL	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g19814	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g21068	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g26233	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g04968	AGL7, AP1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g13078	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g33044	AGL42	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g40642	AGL7, AP1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002217	AGL15	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003069	No alias	not classified & original description: CDS=1-255	0.03	OrthoFinder output from all 47 species
Sam_g06486	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g15354	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g26111	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g26914	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo437868	AGL29	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Solyc01g080785.1.1	AGL61, DIA,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc01g092950.3.1	SOC1, AGL20,...	MADS-box protein SOC1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Solyc02g089210.4.1	AGL7, AP1, Solyc02g089210	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc02g091550.2.1	AGL21, Solyc02g091550	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Solyc05g012020.4.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc10g080030.2.1	AGL18, Solyc10g080030	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Spa_g22852	AGL65	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g20318	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g28519	AGL7, AP1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e015728_P001	AGL16, Zm00001e015728	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	84	168

External Links

No external refs found!

Aspi01Gene19451.t1 (SOC1, AGL20, ATSOC1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation