Aspi01Gene27195.t1 (emb1354, CDC48C,...)

Aliases : emb1354, CDC48C, Aspi01Gene27195

Description : not classified & original description: none

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene27195.t1
Cluster	HCCA: Cluster_129

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00198390	CIP111,...	Calmodulin-interacting protein 111 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AMTR_s00049p00071550	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.02	OrthoFinder output from all 47 species
Adi_g054679	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0074.g037436	CIP111	not classified & original description: CDS=701-3814	0.03	OrthoFinder output from all 47 species
Dde_g43329	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Len_g10346	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Len_g41549	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10879	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g20230	CIP111	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Pp3c12_11370V3.1	Pp3c12_11370	AAA-type ATPase family protein	0.02	OrthoFinder output from all 47 species
Pp3c7_25950V3.1	CDC48A, CDC48,...	ATPase, AAA-type, CDC48 protein	0.02	OrthoFinder output from all 47 species
Ppi_g08291	emb1354, CDC48C	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g53020	emb1354, CDC48C	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g02002	CDC48A, CDC48, ATCDC48	not classified & original description: none	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	599	630
IPR031996	NVL2_nucleolin-bd	20	82
IPR003959	ATPase_AAA_core	428	574

External Links

No external refs found!

Aspi01Gene27195.t1 (emb1354, CDC48C,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation