Aspi01Gene27639.t2 (Aspi01Gene27639)

Aliases : Aspi01Gene27639

Description : RNA helicase Prp43 of Intron-Lariat Spliceosome complex & original description: none

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene27639.t2
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
Ala_g38553	EMB3011	RNA helicase *(Prp16) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene46881.t1	ESP3, EMB2733,...	RNA helicase *(Prp2) & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g04257	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g00692	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0208.g025850	ESP3, EMB2733	not classified & original description: CDS=1-522	0.01	OrthoFinder output from all 47 species
Spa_g22116	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011709	DEAD-box_helicase_OB_fold	615	691
IPR011545	DEAD/DEAH_box_helicase_dom	62	213
IPR001650	Helicase_C	260	391
IPR007502	Helicase-assoc_dom	454	553

External Links

No external refs found!