Aspi01Gene31427.t1 (ATCOL4, COL4, Aspi01Gene31427)

Aliases : ATCOL4, COL4, Aspi01Gene31427

Description : floral promoter *(CONSTANS) & original description: none

Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene31427.t1

Target	Alias	Description	ECC score	Gene Family Method
AT5G24930	ATCOL4, COL4	CONSTANS-like 4	0.04	OrthoFinder output from all 47 species
Als_g51226	ATCOL4, COL4	floral promoter *(CONSTANS) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g22951	ATCOL4, COL4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01036037001	ATCOL4, COL4	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
LOC_Os02g08150.1	ATCOL5, COL5,...	Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os10g41100.1	ATCOL5, COL5,...	Transcription factor GHD7 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
Ppi_g48282	COL1, ATCOL1	floral promoter *(CONSTANS) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g002977	ATCOL4, COL4	floral promoter *(CONSTANS) & original description: CDS=1-1206	0.03	OrthoFinder output from all 47 species
Zm00001e007691_P001	Zm00001e007691	transcription factor (BBX-CO)	0.04	OrthoFinder output from all 47 species
Zm00001e037873_P001	ATCOL4, COL4,...	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Zm00001e041152_P001	ATCOL5, COL5,...	transcription factor (BBX-CO)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010402	CCT_domain	304	346
IPR000315	Znf_B-box	46	90

External Links

No external refs found!