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  5. Aspi01Gene35689.t1

Aspi01Gene35689.t1 (PUB25, Aspi01Gene35689)


Aliases : PUB25, Aspi01Gene35689

Description : not classified & original description: none


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene35689.t1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00159240 PUB23,... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00030p00161650 PUB23,... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00069p00038840 PUB22,... E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00138p00053700 evm_27.TU.AmTr_v1... U-box domain-containing protein 21 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G18710 PUB29, ATPUB29 plant U-box 29 0.03 OrthoFinder output from all 47 species
Ala_g05204 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30969 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62359 PUB26 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44328.t1 PUB23, Aspi01Gene44328 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene56365.t1 PUB25, Aspi01Gene56365 E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g16814 PUB26 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07421 PUB23 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26825 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01464 PUB26 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026764001 PUB22 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_27794 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os04g34030.1 PUB23, LOC_Os04g34030 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os12g06410.1 PUB24, LOC_Os12g06410 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_10430196g0010 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_58844g0020 PUB22 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp3g22750.1 PUB26 U-box domain-containing protein 26 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Nbi_g04802 PUB25 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g10378 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44474 PUB25 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g34239 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19356 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Smo104879 PUB25 U-box domain-containing protein 25 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Smo416356 PUB26 U-box domain-containing protein 30 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Smo426053 PUB26 U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc01g009320.2.1 PUB23, Solyc01g009320 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g009330.1.1 PUB22, Solyc01g009330 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e006484_P001 PUB23, Zm00001e006484 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e007109_P001 PUB23, Zm00001e007109 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e015763_P001 Zm00001e015763 U-box domain-containing protein 21 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e019173_P001 PUB23, Zm00001e019173 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e041397_P001 PUB23, Zm00001e041397 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003613 Ubox_domain 22 93
No external refs found!