Aspi01Gene38983.t1 (ARF16, Aspi01Gene38983)

Aliases : ARF16, Aspi01Gene38983

Description : ARF-type transcription factor & original description: none

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene38983.t1
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00157690	ARF6,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
AMTR_s00061p00077000	ARF18,...	Auxin response factor 18 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AMTR_s00211p00025860	MP, IAA24, ARF5,...	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
AT1G30330	ARF6	auxin response factor 6	0.05	OrthoFinder output from all 47 species
Adi_g014256	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g061151	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14726	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene02982.t1	ARF6, Aspi01Gene02982	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene61150.t1	ARF16, Aspi01Gene61150	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene64733.t1	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Ceric.30G022300.1	ARF6, Ceric.30G022300	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g20944	ARF16	ARF-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Dcu_g27461	ARF6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08681	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09204	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01032251001	ARF19, IAA22, ARF11	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
LOC_Os02g06910.1	ARF6, LOC_Os02g06910	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os02g35140.1	ARF1, LOC_Os02g35140	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os04g57610.1	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Len_g01404	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g14944	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Mp1g07070.1	ARF10	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Mp1g12750.1	ARF6	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Msp_g15857	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g13614	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g30357	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g33112	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19455	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0204.g025692	ARF10	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Solyc07g042260.4.1	ARF19, IAA22,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e013191_P001	ARF19, IAA22,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e016366_P002	ARF11, Zm00001e016366	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	335	418
IPR003340	B3_DNA-bd	149	250

External Links

No external refs found!

Aspi01Gene38983.t1 (ARF16, Aspi01Gene38983)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation