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  5. Aspi01Gene42794.t3

Aspi01Gene42794.t3 (PGP3, MDR3, Aspi01Gene42794)


Aliases : PGP3, MDR3, Aspi01Gene42794

Description : not classified & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene42794.t3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00263610 ABCB19,... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
Aop_g09164 PGP11 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g35283 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene32170.t1 ABCB14,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g01329 PGP2 subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020952.7 PGP2 ABC transporter B family member 2 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g05507 ABCB19,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g38855 PGP11 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Gb_08933 PGP11 ABC transporter B family member 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Lfl_g40244 PGP11 not classified & original description: none 0.14 OrthoFinder output from all 47 species
Mp7g04390.1 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter 0.01 OrthoFinder output from all 47 species
Tin_g41430 PGP11 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 31 153
No external refs found!