Aspi01Gene43218.t1 (PUB24, Aspi01Gene43218)

Aliases : PUB24, Aspi01Gene43218

Description : not classified & original description: none

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene43218.t1

Target	Alias	Description	ECC score	Gene Family Method
AT3G18710	PUB29, ATPUB29	plant U-box 29	0.07	OrthoFinder output from all 47 species
Aob_g34288	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene12032.t1	PUB25, Aspi01Gene12032	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene18467.t1	PUB23, Aspi01Gene18467	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene19350.t1	PUB26, Aspi01Gene19350	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene23397.t1	CMPG1, ATCMPG1,...	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene27391.t1	PUB26, Aspi01Gene27391	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene43214.t1	PUB24, Aspi01Gene43214	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44809.t1	PUB25, Aspi01Gene44809	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os02g33680.1	CMPG2, ATCMPG2,...	U-box domain-containing protein 29 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Pnu_g19356	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c24_16470V3.1	ATPUB17, PUB17,...	RING/U-box superfamily protein with ARM repeat domain	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	14	87

External Links

No external refs found!

Aspi01Gene43218.t1 (PUB24, Aspi01Gene43218)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation