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  5. Aspi01Gene48068.t2

Aspi01Gene48068.t2 (AGL30, Aspi01Gene48068)


Aliases : AGL30, Aspi01Gene48068

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene48068.t2

Target Alias Description ECC score Gene Family Method Actions
AT1G77950 AGL67 AGAMOUS-like 67 0.03 OrthoFinder output from all 47 species
AT4G11880 AGL14 AGAMOUS-like 14 0.03 OrthoFinder output from all 47 species
Aev_g20345 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05911 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38807 AGL91 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11010 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g28471 SHP2, AGL5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g47147 AGL42 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g04227 AGL18 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g47493 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G004300.1 AGL10, CAL1,... not classified & original description: pacid=50627317... 0.05 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g08748 AGL9, SEP3 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50123 AGL3, SEP4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025945001 STK, AGL11 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
LOC_Os01g10504.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g45770.1 AGL6, LOC_Os02g45770 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
LOC_Os05g34940.1 PI, LOC_Os05g34940 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os10g39130.1 GL19, AGL19,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Len_g04127 AGL42 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g08514 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_1767g0010 AGL66 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Msp_g39561 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19814 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41504 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009704 ANR1, AGL44 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Smo437868 AGL29 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Solyc01g106710.1.1 AGL62, Solyc01g106710 component MED19 of head module of MEDIATOR transcription... 0.05 OrthoFinder output from all 47 species
Solyc06g064840.4.1 STK, AGL11,... no description available(sp|f6i457|ag11c_vitvi : 172.0) 0.03 OrthoFinder output from all 47 species
Spa_g45506 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 54
No external refs found!