Aspi01Gene49914.t1 (APUM12, PUM12, Aspi01Gene49914)

Aliases : APUM12, PUM12, Aspi01Gene49914

Description : not classified & original description: none

Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene49914.t1
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01009020001	PUM7, APUM7	Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Pnu_g00833	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g028800.3.1	APUM12, PUM12,...	Pumilio homolog 12 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000571	Znf_CCCH	437	457
IPR001313	Pumilio_RNA-bd_rpt	790	820
IPR001313	Pumilio_RNA-bd_rpt	644	671
IPR001313	Pumilio_RNA-bd_rpt	680	710
IPR001313	Pumilio_RNA-bd_rpt	604	637
IPR001313	Pumilio_RNA-bd_rpt	715	748
IPR001313	Pumilio_RNA-bd_rpt	569	601
IPR001313	Pumilio_RNA-bd_rpt	831	848
IPR001313	Pumilio_RNA-bd_rpt	753	771

External Links

No external refs found!