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  5. Aspi01Gene50700.t1

Aspi01Gene50700.t1 (PKR1, CHR4, Aspi01Gene50700)


Aliases : PKR1, CHR4, Aspi01Gene50700

Description : CHD3-type chromatin remodeling factor *(PKL/PKR) & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene50700.t1

Target Alias Description ECC score Gene Family Method Actions
Ala_g02726 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Ala_g11306 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g27421 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06827 PKR1, CHR4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g58750 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Cre08.g377200 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.01 OrthoFinder output from all 47 species
Dac_g07364 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g22721 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g05780.1 CHR11, LOC_Os05g05780 chromatin remodeling factor (Iswi) 0.03 OrthoFinder output from all 47 species
Len_g01407 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Mp4g00040.1 PKR1, CHR4 chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species
Pnu_g18818 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ppi_g17433 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005448 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description:... 0.02 OrthoFinder output from all 47 species
Sam_g20696 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000313 PWWP_dom 113 208
IPR001005 SANT/Myb 1861 1907
IPR000330 SNF2_N 866 1140
IPR001650 Helicase_C 1165 1277
IPR023780 Chromo_domain 760 808
IPR009463 DUF1087 1454 1497
IPR019787 Znf_PHD-finger 344 387
No external refs found!