Aspi01Gene51864.t1 (ARF16, Aspi01Gene51864)

Aliases : ARF16, Aspi01Gene51864

Description : ARF-type transcription factor & original description: none

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene51864.t1

Target	Alias	Description	ECC score	Gene Family Method
AT1G30330	ARF6	auxin response factor 6	0.03	OrthoFinder output from all 47 species
AT5G20730	TIR5, MSG1,...	Transcriptional factor B3 family protein /...	0.03	OrthoFinder output from all 47 species
Adi_g025684	ARF9	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g054964	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g27966	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g33091	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g27918	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene61150.t1	ARF16, Aspi01Gene61150	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.10G078200.1	ARF6, Ceric.10G078200	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020904.93	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dac_g03840	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01035205001	ARF8, ATARF8	Auxin response factor 12 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
LOC_Os02g06910.1	ARF6, LOC_Os02g06910	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os04g57610.1	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
MA_10431695g0010	ARF19, IAA22, ARF11	Auxin response factor 19 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_10432580g0010	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Mp1g07070.1	ARF10	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Ore_g15165	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g17376	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013444	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0204.g025692	ARF10	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g16843	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e032423_P002	ARF3, ETT, Zm00001e032423	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	131	232
IPR010525	ARF_dom	317	400

External Links

No external refs found!

Aspi01Gene51864.t1 (ARF16, Aspi01Gene51864)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation