Aspi01Gene59762.t1 (DCL1, CAF, EMB76,...)

Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1, Aspi01Gene59762

Description : endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA bioGenesis complex & original description: none

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene59762.t1

Target	Alias	Description	ECC score	Gene Family Method
AT5G20320	DCL4, ATDCL4	dicer-like 4	0.02	OrthoFinder output from all 47 species
Adi_g068389	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0154.g053526	DCL1, CAF,...	not classified & original description: CDS=655-2703	0.03	OrthoFinder output from all 47 species
Cba_g01358	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.08	OrthoFinder output from all 47 species
Cba_g38723	DCL4, ATDCL4	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.04	OrthoFinder output from all 47 species
MA_10436812g0020	DCL4, ATDCL4	Dicer-like protein 4 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_10437243g0020	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Nbi_g15966	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g54675	ATDCL2, DCL2	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Smo448444	DCL1, CAF,...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.03	OrthoFinder output from all 47 species
Tin_g25551	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003100	PAZ_dom	1260	1389
IPR001650	Helicase_C	701	818
IPR006935	Helicase/UvrB_N	295	464
IPR000999	RNase_III_dom	1658	1771
IPR000999	RNase_III_dom	1426	1582

External Links

No external refs found!

Aspi01Gene59762.t1 (DCL1, CAF, EMB76,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation