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  5. Aspi01Gene62048.t2

Aspi01Gene62048.t2 (PGP2, Aspi01Gene62048)


Aliases : PGP2, Aspi01Gene62048

Description : subfamily ABCB transporter & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene62048.t2

Target Alias Description ECC score Gene Family Method Actions
AT2G39480 PGP6 P-glycoprotein 6 0.03 OrthoFinder output from all 47 species
Aob_g02407 PGP20 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0230.g059155 No alias not classified & original description: CDS=1-966 0.01 OrthoFinder output from all 47 species
Azfi_s0232.g059284 PGP13 subfamily ABCB transporter & original description: CDS=307-4314 0.03 OrthoFinder output from all 47 species
Dac_g10744 PGP6 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021366001 PGP9 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
GSVIVT01025040001 PGP20 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
GSVIVT01033645001 PGP1, ABCB1, ATPGP1 Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
Gb_20009 PGP6 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_31652 PGP6 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Pir_g30508 PGP5 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006153 PGP11 subfamily ABCB transporter & original description: CDS=261-4235 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006646 PGP20 subfamily ABCB transporter & original description: CDS=24-3872 0.04 OrthoFinder output from all 47 species
Sam_g52431 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Smo123936 ATPGP4, PGP4, ABCB4, MDR4 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Zm00001e021746_P001 PGP1, ABCB1,... ABC transporter B family member 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 406 675
IPR003439 ABC_transporter-like_ATP-bd 88 237
IPR003439 ABC_transporter-like_ATP-bd 744 892
No external refs found!