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  5. Aspi01Gene62384.t1

Aspi01Gene62384.t1 (PKR1, CHR4, Aspi01Gene62384)


Aliases : PKR1, CHR4, Aspi01Gene62384

Description : CHD3-type chromatin remodeling factor *(PKL/PKR) & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene62384.t1

Target Alias Description ECC score Gene Family Method Actions
Adi_g004816 SYD, CHR3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02726 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Ala_g27421 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene47132.t1 SYD, CHR3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62384.t2 PKR1, CHR4,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Cba_g06827 PKR1, CHR4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g58750 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021623.13 PKL, GYM, CHR6,... RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
GSVIVT01012117001 PKR1, CHR4 RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
GSVIVT01037235001 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Lfl_g06769 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Mp1g05480.1 CHR5 chromatin remodeling factor (Chd1). component CHR5 of... 0.03 OrthoFinder output from all 47 species
Mp4g00040.1 PKR1, CHR4 chromatin remodeling factor (Chd3/Mi-2) 0.05 OrthoFinder output from all 47 species
Ore_g18803 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Pp3c15_6140V3.1 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 1125 1238
IPR019787 Znf_PHD-finger 296 338
IPR000330 SNF2_N 827 1101
IPR023780 Chromo_domain 721 765
IPR009463 DUF1087 1422 1461
No external refs found!