Aspi01Gene64232.t1 (PGP11, Aspi01Gene64232)

Aliases : PGP11, Aspi01Gene64232

Description : subfamily ABCB transporter & original description: none

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene64232.t1
Cluster	HCCA: Cluster_125

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00128460	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
Ala_g17861	ABCB19,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g33590	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g36024	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s2496.g111845	ABCB19,...	subfamily ABCB transporter & original description: CDS=142-3066	0.03	OrthoFinder output from all 47 species
Ceric.06G076400.1	ABCB19,...	subfamily ABCB transporter & original description:...	0.04	OrthoFinder output from all 47 species
Dcu_g47815	PGP11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_02468	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_10215	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_32125	PGP11	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os01g74470.1	PGP20, LOC_Os01g74470	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os03g08380.1	ABCB19,...	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
MA_10432922g0010	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
MA_8590327g0010	No alias	ABC transporter B family member 17 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp7g04390.1	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Msp_g17749	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g26680	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g27278	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g03992	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g04001	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g18841	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002681	ABCB19,...	regulatory protein *(HY5) of UV-B signal transduction &...	0.03	OrthoFinder output from all 47 species
Smo419451	No alias	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Spa_g26470	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g21567	No alias	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g35652	PGP11	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g41174	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	379	526
IPR011527	ABC1_TM_dom	721	943
IPR011527	ABC1_TM_dom	35	308
IPR003439	ABC_transporter-like_ATP-bd	1016	1170

External Links

No external refs found!

Aspi01Gene64232.t1 (PGP11, Aspi01Gene64232)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation