Aspi01Gene69641.t1 (PUB13, ATPUB13,...)

Aliases : PUB13, ATPUB13, Aspi01Gene69641

Description : E3 ubiquitin ligase *(PUB8) & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene69641.t1
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00217990	evm_27.TU.AmTr_v1...	U-box domain-containing protein 16 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT1G23030	No alias	ARM repeat superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g009234	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g013470	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g03799	ATPUB17, PUB17	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g07222	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g09506	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB8) & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene30765.t1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.13G093000.1	ATPUB17, PUB17,...	not classified & original description: pacid=50635700...	0.03	OrthoFinder output from all 47 species
Ceric.35G034600.1	PUB18, ATPUB18,...	not classified & original description: pacid=50581001...	0.03	OrthoFinder output from all 47 species
Dac_g12067	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g11164	PUB12, AtPUB12	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g29208	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009347001	No alias	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01020229001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
GSVIVT01036669001	No alias	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
LOC_Os02g49950.1	LOC_Os02g49950	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os05g39930.1	LOC_Os05g39930	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Nbi_g07136	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g01319	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g06298	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc04g077850.3.1	Solyc04g077850	U-box domain-containing protein 4 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Spa_g25117	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g48656	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g10003	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e023475_P001	Zm00001e023475	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Zm00001e028839_P001	Zm00001e028839	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	482	519
IPR000225	Armadillo	398	437
IPR000225	Armadillo	441	478
IPR003613	Ubox_domain	283	353

External Links

No external refs found!

Aspi01Gene69641.t1 (PUB13, ATPUB13,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation