Aliases : CRR22
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00029p00042600 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g33680... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G31430 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT5G13230 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g035618 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g036796 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g036802 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g061031 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g100991 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g11910 | OTP86 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g16836 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g17648 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g24194 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g28308 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g32056 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g36433 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g06689 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g06803 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g09042 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g24237 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g26963 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g27592 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g37587 | OTP86 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0032.g024917 | No alias | not classified & original description: CDS=1-3621 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g05288 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g02877 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g08500 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g08714 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g21447 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g21452 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g47902 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g16902 | EMB2261 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os09g24640.1 | REME1, LOC_Os09g24640 | Pentatricopeptide repeat-containing protein At2g36730... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g18593 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g18787 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_794605g0010 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g03953 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g31423 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g47208 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g04976 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g06317 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g07710 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g09316 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g20192 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g01500 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g63626 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g11638 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g31070 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g48074 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0005.g002764 | No alias | not classified & original description: CDS=1-2754 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0029.g010179 | No alias | not classified & original description: CDS=88-2685 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s3367.g028731 | No alias | not classified & original description: CDS=2473-3459 | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g025700.2.1 | Solyc03g025700 | OTP70 plastidial RNA splicing factor | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g096610.2.1 | Solyc03g096610 | Pentatricopeptide repeat-containing protein At1g33350... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc04g051480.1.1 | OTP84, Solyc04g051480 | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g50449 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| BP | GO:0006405 | RNA export from nucleus | IEP | HCCA |
| BP | GO:0006406 | mRNA export from nucleus | IEP | HCCA |
| BP | GO:0006629 | lipid metabolic process | IEP | HCCA |
| BP | GO:0006810 | transport | IEP | HCCA |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | HCCA |
| BP | GO:0016973 | poly(A)+ mRNA export from nucleus | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| BP | GO:0050657 | nucleic acid transport | IEP | HCCA |
| BP | GO:0050658 | RNA transport | IEP | HCCA |
| BP | GO:0051028 | mRNA transport | IEP | HCCA |
| BP | GO:0051168 | nuclear export | IEP | HCCA |
| BP | GO:0051169 | nuclear transport | IEP | HCCA |
| BP | GO:0051179 | localization | IEP | HCCA |
| BP | GO:0051234 | establishment of localization | IEP | HCCA |
| BP | GO:0051236 | establishment of RNA localization | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| BP | GO:0071702 | organic substance transport | IEP | HCCA |
| BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 223 | 271 |
| IPR002885 | Pentatricopeptide_repeat | 425 | 473 |
| IPR002885 | Pentatricopeptide_repeat | 122 | 170 |
| IPR002885 | Pentatricopeptide_repeat | 325 | 372 |
| IPR002885 | Pentatricopeptide_repeat | 97 | 119 |
| IPR046848 | E_motif | 543 | 587 |
| IPR002885 | Pentatricopeptide_repeat | 493 | 524 |
| No external refs found! |
