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  5. Ceric.04G042600.1

Ceric.04G042600.1 (Ceric.04G042600)


Aliases : Ceric.04G042600

Description : not classified & original description: pacid=50631655 polypeptide=Ceric.04G042600.1.p locus=Ceric.04G042600 ID=Ceric.04G042600.1.v2.1 annot-version=v2.1


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.04G042600.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g012805 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08911 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15384 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os10g33230.1 LOC_Os10g33230 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g08078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06388 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10981 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g42383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g42385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g47484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51949 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo101375 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc02g093340.3.1 Solyc02g093340 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g21333 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 140 207
No external refs found!