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  5. Ceric.04G064800.1

Ceric.04G064800.1 (BUM1, SHL, STM, WAM,...)


Aliases : BUM1, SHL, STM, WAM, WAM1, BUM, Ceric.04G064800

Description : KNOX-type transcription factor & original description: pacid=50631880 polypeptide=Ceric.04G064800.1.p locus=Ceric.04G064800 ID=Ceric.04G064800.1.v2.1 annot-version=v2.1


Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.04G064800.1
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00085p00165180 KNAT6, KNAT6L,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.02 OrthoFinder output from all 47 species
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.05 OrthoFinder output from all 47 species
Adi_g019966 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g05964 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02808 No alias KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16044 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g51107 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g17223 KNAT3 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08817 KNAT3 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g009595 BUM1, SHL, STM,... KNOX-type transcription factor & original description: CDS=1-1050 0.05 OrthoFinder output from all 47 species
Azfi_s0049.g030818 KNAT3 KNOX-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Azfi_s0350.g066569 BUM1, SHL, STM,... KNOX-type transcription factor & original description: CDS=1-1488 0.03 OrthoFinder output from all 47 species
GSVIVT01009273001 BP, BP1, KNAT1 RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
Gb_00573 BUM1, SHL, STM,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
LOC_Os01g19694.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
LOC_Os03g51690.2 BP, BP1, KNAT1,... transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
LOC_Os05g03884.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
LOC_Os07g03770.1 BP, BP1, KNAT1,... transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
Ore_g25529 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c19_5610V3.1 Pp3c19_5610 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c6_1550V3.1 KNAT4, Pp3c6_1550 KNOTTED1-like homeobox gene 3 0.02 OrthoFinder output from all 47 species
Ppi_g15325 KNAT4 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g100510.4.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species
Solyc02g081120.4.1 BUM1, SHL, STM,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Solyc04g077210.3.1 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Solyc08g041820.3.1 KNAT3, Solyc08g041820 transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species
Zm00001e005547_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e029453_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.06 OrthoFinder output from all 47 species
Zm00001e032761_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005539 ELK_dom 373 392
IPR005541 KNOX2 264 309
IPR005540 KNOX1 213 252
IPR008422 Homeobox_KN_domain 411 450
No external refs found!