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  5. Ceric.05G042400.1

Ceric.05G042400.1 (Ceric.05G042400)


Aliases : Ceric.05G042400

Description : component *(uS3c) of small plastid ribosomal-subunit proteome & original description: pacid=50577674 polypeptide=Ceric.05G042400.1.p locus=Ceric.05G042400 ID=Ceric.05G042400.1.v2.1 annot-version=v2.1


Gene families : OG0006596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006596_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.05G042400.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
ATCG00800 No alias structural constituent of ribosome 0.21 OrthoFinder output from all 47 species
Aev_g14422 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.26 OrthoFinder output from all 47 species
Als_g09230 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.15 OrthoFinder output from all 47 species
Cba_g05105 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Ceric.1Z164000.1 Ceric.1Z164000 not classified & original description: pacid=50596956... 0.07 OrthoFinder output from all 47 species
Dcu_g13090 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Gb_15033 No alias component psRPS3 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
LOC_Os04g16824.1 LOC_Os04g16824 component psRPS3 of small ribosomal subunit proteome 0.31 OrthoFinder output from all 47 species
LOC_Os09g24416.1 LOC_Os09g24416 component psRPS3 of small ribosomal subunit proteome 0.28 OrthoFinder output from all 47 species
Lfl_g28864 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.16 OrthoFinder output from all 47 species
Msp_g15785 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g10343 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Pir_g00314 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.18 OrthoFinder output from all 47 species
Sacu_v1.1_s3366.g028730 No alias not classified & original description: CDS=1-393 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s3471.g028813 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Solyc00g500034.1.1 Solyc00g500034 component psRPL22 of large ribosomal subunit proteome.... 0.05 OrthoFinder output from all 47 species
Solyc09g050066.1.1 Solyc09g050066 30S ribosomal protein S3, chloroplastic OS=Solanum... 0.03 OrthoFinder output from all 47 species
Zm00001e003906_P001 Zm00001e003906 component psRPS3 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Zm00001e009620_P001 Zm00001e009620 component psRPS3 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Zm00001e011301_P001 Zm00001e011301 component psRPS3 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Zm00001e042063_P001 Zm00001e042063 component psRPS3 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Zm00001e042087_P001 Zm00001e042087 component psRPS3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042094_P001 Zm00001e042094 component psRPS3 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Zm00001e042375_P001 Zm00001e042375 component psRPS3 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Zm00001e042402_P001 Zm00001e042402 component psRPS3 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Zm00001e042447_P001 Zm00001e042447 component psRPS3 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 115 197
No external refs found!