Aliases : HAM2, LOM2, ATHAM2, Ceric.08G011800
Description : GRAS-type transcription factor & original description: pacid=50638781 polypeptide=Ceric.08G011800.1.p locus=Ceric.08G011800 ID=Ceric.08G011800.1.v2.1 annot-version=v2.1
Gene families : OG0002830 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002830_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Ceric.08G011800.1 | |
| Cluster | HCCA: Cluster_54 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00044p00228020 | ATHAM3, HAM3,... | RNA biosynthesis.transcriptional activation.GRAS... | 0.04 | OrthoFinder output from all 47 species | |
| AT2G45160 | ATHAM1, HAM1, LOM1 | GRAS family transcription factor | 0.04 | OrthoFinder output from all 47 species | |
| AT3G60630 | HAM2, LOM2, ATHAM2 | GRAS family transcription factor | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g12093 | ATHAM3, HAM3, LOM3 | GRAS-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ehy_g01644 | No alias | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g03844 | No alias | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g24209 | ATHAM3, HAM3, LOM3 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g02436 | ATHAM3, HAM3, LOM3 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g03889 | ATHAM3, HAM3, LOM3 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g20903 | ATHAM3, HAM3, LOM3 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g22708 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g23184 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g35180 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0012.g005674 | No alias | GRAS-type transcription factor & original description: CDS=1-2607 | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g090950.4.1 | ATHAM3, HAM3,... | transcription factor (GRAS) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc08g078800.1.1 | ATHAM3, HAM3,... | transcription factor (GRAS) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e000046_P001 | ATHAM3, HAM3,... | transcription factor (GRAS) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e002296_P001 | ATHAM3, HAM3,... | transcription factor (GRAS) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e015355_P002 | ATHAM3, HAM3,... | transcription factor (GRAS) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e023181_P003 | ATHAM3, HAM3,... | transcription factor (GRAS) | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005543 | phospholipid binding | IEP | HCCA |
| BP | GO:0005984 | disaccharide metabolic process | IEP | HCCA |
| BP | GO:0005991 | trehalose metabolic process | IEP | HCCA |
| BP | GO:0005992 | trehalose biosynthetic process | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0009311 | oligosaccharide metabolic process | IEP | HCCA |
| BP | GO:0009312 | oligosaccharide biosynthetic process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016051 | carbohydrate biosynthetic process | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0032182 | ubiquitin-like protein binding | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | HCCA |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | HCCA |
| MF | GO:0043130 | ubiquitin binding | IEP | HCCA |
| BP | GO:0046351 | disaccharide biosynthetic process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005202 | TF_GRAS | 435 | 803 |
| No external refs found! |
