Aliases : EIN5, AIN1, XRN4, ATXRN4, Ceric.08G059400
Description : exoribonuclease *(XRN4) & original description: pacid=50638757 polypeptide=Ceric.08G059400.1.p locus=Ceric.08G059400 ID=Ceric.08G059400.1.v2.1 annot-version=v2.1
Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00025p00024460 | XRN3, AtXRN3,... | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00491p00000370 | XRN3, AtXRN3,... | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
| AT1G54490 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease 4 | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g078672 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g17886 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g15103 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Als_g21055 | XRN3, AtXRN3 | exoribonuclease *(XRN4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g06747 | XRN3, AtXRN3 | exoribonuclease *(XRN4) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene51564.t1 | EIN5, AIN1,... | exoribonuclease *(XRN4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g15355 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g07777 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g05069 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01009879001 | XRN3, AtXRN3 | RNA biosynthesis.RNA polymerase II-dependent... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01021865001 | EIN5, AIN1, XRN4, ATXRN4 | RNA processing.RNA decay.deadenylation-dependent... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os03g58060.1 | EIN5, AIN1,... | EBF-modulating exoribonuclease (EIN5/XRN4).... | 0.05 | OrthoFinder output from all 47 species | |
| Len_g50910 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g06753 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Lfl_g19229 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Mp3g08820.1 | XRN3, AtXRN3 | exoribonuclease (RAT1/XRN2) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g13176 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Sam_g12064 | No alias | exoribonuclease *(RAT1/XRN2) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g38845 | No alias | exoribonuclease *(XRN4) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g01285 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g46210 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e011879_P001 | EIN5, AIN1,... | EBF-modulating exoribonuclease (EIN5/XRN4).... | 0.1 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0004527 | exonuclease activity | IEA | Interproscan |
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004402 | histone acetyltransferase activity | IEP | HCCA |
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| BP | GO:0006473 | protein acetylation | IEP | HCCA |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0008104 | protein localization | IEP | HCCA |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| BP | GO:0015031 | protein transport | IEP | HCCA |
| MF | GO:0016407 | acetyltransferase activity | IEP | HCCA |
| MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
| BP | GO:0016570 | histone modification | IEP | HCCA |
| BP | GO:0016573 | histone acetylation | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | HCCA |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
| MF | GO:0019899 | enzyme binding | IEP | HCCA |
| MF | GO:0031267 | small GTPase binding | IEP | HCCA |
| BP | GO:0033036 | macromolecule localization | IEP | HCCA |
| MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0043543 | protein acylation | IEP | HCCA |
| BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| MF | GO:0051020 | GTPase binding | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
| MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| No external refs found! |
