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  5. Ceric.14G028300.1

Ceric.14G028300.1 (ATRPS13A, RPS13,...)


Aliases : ATRPS13A, RPS13, PFL2, RPS13A, Ceric.14G028300

Description : component *(uS15) of small ribosomal-subunit (SSU) proteome & original description: pacid=50633806 polypeptide=Ceric.14G028300.1.p locus=Ceric.14G028300 ID=Ceric.14G028300.1.v2.1 annot-version=v2.1


Gene families : OG0001931 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001931_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.14G028300.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00088200 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT3G60770 No alias Ribosomal protein S13/S15 0.04 OrthoFinder output from all 47 species
AT4G00100 ATRPS13A, RPS13,... ribosomal protein S13A 0.04 OrthoFinder output from all 47 species
Aop_g41112 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cre07.g331900 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Dcu_g05283 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01018537001 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01027637001 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Gb_34582 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os07g38540.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os08g02400.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os08g02410.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
Len_g05038 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g14184 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_141232g0010 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp4g03410.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.04 OrthoFinder output from all 47 species
Nbi_g15982 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pp3c16_15220V3.1 ATRPS13A, RPS13,... ribosomal protein S13A 0.02 OrthoFinder output from all 47 species
Pp3c7_26720V3.1 ATRPS13A, RPS13,... ribosomal protein S13A 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006675 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016899 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g18450 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g20369 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g37409 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Solyc01g091220.3.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc03g083530.3.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.04 OrthoFinder output from all 47 species
Solyc05g051000.3.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc11g072260.2.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.04 OrthoFinder output from all 47 species
Spa_g03180 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e021837_P003 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e021839_P001 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e029210_P002 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012606 Ribosomal_S13/S15_N 1 60
IPR000589 Ribosomal_S15 75 146
No external refs found!