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  5. Ceric.15G033300.1

Ceric.15G033300.1 (ATVPS54, VPS54,...)


Aliases : ATVPS54, VPS54, Ceric.15G033300

Description : GARP-specific component *(VPS54) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: pacid=50640803 polypeptide=Ceric.15G033300.1.p locus=Ceric.15G033300 ID=Ceric.15G033300.1.v2.1 annot-version=v2.1


Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.15G033300.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00168660 ATVPS54, VPS54,... Vesicle trafficking.target membrane tethering.GARP/EARP... 0.05 OrthoFinder output from all 47 species
AT4G19490 ATVPS54, VPS54 VPS54 0.06 OrthoFinder output from all 47 species
Adi_g063596 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Ala_g02680 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.1 OrthoFinder output from all 47 species
Als_g05127 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.08 OrthoFinder output from all 47 species
Aob_g22183 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Aspi01Gene49548.t1 ATVPS54, VPS54,... GARP-specific component *(VPS54) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.25 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001408.18 ATVPS54, VPS54 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Cre02.g087551 ATVPS54, VPS54 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.05 OrthoFinder output from all 47 species
Dcu_g12433 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.14 OrthoFinder output from all 47 species
Dde_g11326 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
GSVIVT01037972001 ATVPS54, VPS54 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.05 OrthoFinder output from all 47 species
Gb_03763 ATVPS54, VPS54 GARP-specific component VPS54 of GARP/EARP... 0.07 OrthoFinder output from all 47 species
LOC_Os04g13470.1 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.17 OrthoFinder output from all 47 species
Len_g01396 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Lfl_g02410 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.1 OrthoFinder output from all 47 species
MA_207440g0010 No alias GARP-specific component VPS54 of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Mp5g09490.1 ATVPS54, VPS54 GARP-specific component VPS54 of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Msp_g23962 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Nbi_g16046 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Ore_g15136 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.06 OrthoFinder output from all 47 species
Pir_g01065 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Ppi_g03262 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.06 OrthoFinder output from all 47 species
Sam_g10508 No alias GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Solyc02g030110.2.1 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Zm00001e008702_P001 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.2 OrthoFinder output from all 47 species
Zm00001e040599_P001 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.18 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR012501 Vps54_C 863 995
No external refs found!