Ceric.17G059000.1 (Ceric.17G059000)

Aliases : Ceric.17G059000

Description : type-1A topoisomerase TOP3b & original description: pacid=50617148 polypeptide=Ceric.17G059000.1.p locus=Ceric.17G059000 ID=Ceric.17G059000.1.v2.1 annot-version=v2.1

Gene families : OG0002141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002141_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.17G059000.1

Target	Alias	Description	ECC score	Gene Family Method
AT2G32000	No alias	DNA topoisomerase, type IA, core	0.03	OrthoFinder output from all 47 species
Adi_g116169	AtTOP3alpha, TOP3A	topoisomerase component *(TOP3-alpha) of RTR Holliday...	0.03	OrthoFinder output from all 47 species
Als_g10803	AtTOP3alpha, TOP3A	topoisomerase component *(TOP3-alpha) of RTR Holliday...	0.03	OrthoFinder output from all 47 species
Dcu_g12778	No alias	type-1A topoisomerase TOP3b & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01031636001	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
Sam_g13655	No alias	type-1A topoisomerase TOP3b & original description: none	0.04	OrthoFinder output from all 47 species
Smo168492	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	HCCA
CC	GO:0030131	clathrin adaptor complex	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006171	TOPRIM_domain	5	150
IPR013497	Topo_IA_cen	165	576

External Links

No external refs found!

Ceric.17G059000.1 (Ceric.17G059000)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation