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  5. Ceric.20G005100.1

Ceric.20G005100.1 (Ceric.20G005100)


Aliases : Ceric.20G005100

Description : E3 ubiquitin ligase *(RMA/MUSE) & original description: pacid=50566006 polypeptide=Ceric.20G005100.1.p locus=Ceric.20G005100 ID=Ceric.20G005100.1.v2.1 annot-version=v2.1


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.20G005100.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Aop_g12201 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14817.t1 Aspi01Gene14817 E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene43421.t1 Aspi01Gene43421 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0032.g024585 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-897 0.05 OrthoFinder output from all 47 species
LOC_Os04g44820.1 RMA3, ATRMA3,... RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species
Len_g01102 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.14 OrthoFinder output from all 47 species
Len_g03115 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.15 OrthoFinder output from all 47 species
Nbi_g12014 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.26 OrthoFinder output from all 47 species
Nbi_g13792 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.26 OrthoFinder output from all 47 species
Ppi_g62388 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.1 OrthoFinder output from all 47 species
Spa_g10565 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.25 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 96 138
No external refs found!