Ceric.20G087500.1 (ARF1, Ceric.20G087500)

Aliases : ARF1, Ceric.20G087500

Description : ARF-type transcription factor & original description: pacid=50566845 polypeptide=Ceric.20G087500.1.p locus=Ceric.20G087500 ID=Ceric.20G087500.1.v2.1 annot-version=v2.1

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.20G087500.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00148p00046020	ARF16,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
AT5G20730	TIR5, MSG1,...	Transcriptional factor B3 family protein /...	0.03	OrthoFinder output from all 47 species
AT5G60450	ARF4	auxin response factor 4	0.03	OrthoFinder output from all 47 species
Adi_g011925	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g084657	ARF19, IAA22, ARF11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g103241	TIR5, MSG1,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g14401	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene45721.t2	ARF6, Aspi01Gene45721	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0005.g009155	ARF6	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Cba_g07702	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g11427	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g19294	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g17078	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g01740	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07020	ARF10	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09257	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01008950001	ARF17	Auxin response factor 17 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01032251001	ARF19, IAA22, ARF11	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
Gb_32864	ARF6	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os04g43910.1	ARF10, LOC_Os04g43910	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os06g09660.1	ARF19, IAA22,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Lfl_g18657	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_10022392g0010	ARF6	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
MA_85955g0010	ARF19, IAA22, ARF11	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Msp_g14175	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g03505	ARF10	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g04406	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g28812	No alias	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Solyc05g056040.3.1	ARF11, Solyc05g056040	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Spa_g49441	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e013639_P001	ARF19, IAA22,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e014833_P002	ARF1, Zm00001e014833	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e016366_P002	ARF11, Zm00001e016366	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e025163_P001	ARF6, Zm00001e025163	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e028396_P001	HSS, ARF1-BP,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	273	355
IPR003340	B3_DNA-bd	145	249
IPR033389	AUX/IAA_dom	666	754

External Links

No external refs found!

Ceric.20G087500.1 (ARF1, Ceric.20G087500)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation