Aliases : CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1, DDM1, Ceric.21G081900
Description : chromatin remodeling factor *(DDM1) & original description: pacid=50603380 polypeptide=Ceric.21G081900.1.p locus=Ceric.21G081900 ID=Ceric.21G081900.1.v2.1 annot-version=v2.1
Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00071p00058700 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00086p00165640 | PKL, GYM, CHR6,... | Chromatin organisation.chromatin remodeling... | 0.03 | OrthoFinder output from all 47 species | |
| AT5G18620 | CHR17 | chromatin remodeling factor17 | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g058025 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g28495 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g22693 | CHR17 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g59182 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g59637 | CHR11 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g14299 | CHR11 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g25745 | CHR17 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene24029.t1 | CHR5, Aspi01Gene24029 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0129.g048917 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g02108 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g02115 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g13700 | No alias | chromatin remodeling factor *(ALC1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.06G004000.1 | Ceric.06G004000 | chromatin remodeling factor *(ALC1) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000545.10 | ATCHR12 | Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
| Cre03.g158550 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.03 | OrthoFinder output from all 47 species | |
| Cre09.g390000 | CHR17 | RNA biosynthesis.transcriptional activation.PHD finger... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g05131 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g07364 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g21252 | CHR17 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g05806 | CHR11 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g15911 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g42061 | CHR5 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01018218001 | No alias | Chromatin organisation.chromatin remodeling... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01018979001 | CHR01, CHR1,... | ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01035901001 | PKL, GYM, CHR6,... | Chromatin organisation.chromatin remodeling... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_05671 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_16888 | CHR01, CHR1,... | ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g51230.2 | CHR01, CHR1,... | chromatin remodeling factor (DDM1) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os09g27060.1 | CHR01, CHR1,... | chromatin remodeling factor (DDM1) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g29294 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04983 | CHR11 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.03 | OrthoFinder output from all 47 species | |
| MA_104034g0010 | CHR01, CHR1,... | chromatin remodeling factor (DDM1) | 0.04 | OrthoFinder output from all 47 species | |
| MA_42406g0010 | CHR01, CHR1,... | chromatin remodeling factor (DDM1) | 0.05 | OrthoFinder output from all 47 species | |
| Mp4g12200.1 | CHR01, CHR1,... | chromatin remodeling factor (DDM1) | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g13221 | CHR17 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g04407 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g23435 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g07635 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g13843 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g17433 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g32094 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0004.g002414 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0022.g008525 | CHR11 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0168.g024260 | CHR01, CHR1,... | not classified & original description: CDS=245-1573 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g40553 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g085390.4.1 | CHR01, CHR1,... | chromatin remodeling factor (DDM1) | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g13795 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g46637 | PKL, GYM, CHR6,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g28925 | PKR1, CHR4 | CHD3-type chromaTin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e005517_P002 | CHR01, CHR1,... | chromatin remodeling factor (DDM1) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e017643_P001 | CHR17, Zm00001e017643 | chromatin remodeling factor (Iswi) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005524 | ATP binding | IEA | Interproscan |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006298 | mismatch repair | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006950 | response to stress | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
| MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0043138 | 3'-5' DNA helicase activity | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0050896 | response to stimulus | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| No external refs found! |
