Ceric.22G050500.1 (ATO, Ceric.22G050500)

Aliases : ATO, Ceric.22G050500

Description : component *(SF3A3) of splicing factor 3A complex & original description: pacid=50615191 polypeptide=Ceric.22G050500.1.p locus=Ceric.22G050500 ID=Ceric.22G050500.1.v2.1 annot-version=v2.1

Gene families : OG0005469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005469_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.22G050500.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00243200	ATO,...	RNA processing.RNA splicing.U2-type-intron-specific...	0.04	OrthoFinder output from all 47 species
Als_g01809	ATO	component *(SF3A3) of splicing factor 3A complex &...	0.04	OrthoFinder output from all 47 species
Aob_g07243	ATO	component *(SF3A3) of splicing factor 3A complex &...	0.03	OrthoFinder output from all 47 species
Aop_g07359	ATO	component *(SF3A3) of splicing factor 3A complex &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000912.17	ATO	RNA processing.RNA splicing.U2-type-intron-specific...	0.01	OrthoFinder output from all 47 species
Cre06.g297750	ATO	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
LOC_Os03g50850.1	ATO, LOC_Os03g50850	component SF3A3 of splicing factor 3A complex	0.02	OrthoFinder output from all 47 species
Lfl_g03055	ATO	component *(SF3A3) of splicing factor 3A complex &...	0.04	OrthoFinder output from all 47 species
MA_10435481g0010	ATO	component SF3A3 of splicing factor 3A complex	0.03	OrthoFinder output from all 47 species
Mp4g20400.1	ATO	component SF3A3 of splicing factor 3A complex	0.05	OrthoFinder output from all 47 species
Msp_g11580	ATO	component *(SF3A3) of splicing factor 3A complex &...	0.02	OrthoFinder output from all 47 species
Sam_g10973	No alias	component *(SF3A3) of splicing factor 3A complex &...	0.02	OrthoFinder output from all 47 species
Sam_g24778	No alias	component *(SF3A3) of splicing factor 3A complex &...	0.03	OrthoFinder output from all 47 species
Solyc03g083430.3.1	ATO, Solyc03g083430	component SF3A3 of splicing factor 3A complex	0.06	OrthoFinder output from all 47 species
Tin_g06550	ATO	component *(SF3A3) of splicing factor 3A complex &...	0.03	OrthoFinder output from all 47 species
Zm00001e020148_P003	ATO, Zm00001e020148	component SF3A3 of splicing factor 3A complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR021966	SF3a60_bindingd	80	106
IPR024598	SF3a60/Prp9_C	378	497
IPR031774	SF3A3_dom	128	176

External Links

No external refs found!

Ceric.22G050500.1 (ATO, Ceric.22G050500)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation