Ceric.29G070000.1 (ARF6, Ceric.29G070000)

Aliases : ARF6, Ceric.29G070000

Description : ARF-type transcription factor & original description: pacid=50625381 polypeptide=Ceric.29G070000.1.p locus=Ceric.29G070000 ID=Ceric.29G070000.1.v2.1 annot-version=v2.1

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.29G070000.1
Cluster	HCCA: Cluster_117

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00215020	evm_27.TU.AmTr_v1...	No description available	0.04	OrthoFinder output from all 47 species
AT2G46530	ARF11	auxin response factor 11	0.04	OrthoFinder output from all 47 species
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.03	OrthoFinder output from all 47 species
Adi_g024483	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g075709	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g02591	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g12905	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g14401	ARF16	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g16977	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g46643	HSS, ARF1-BP, ARF2, ORE14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g27139	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g27900	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01004942001	HSS, ARF1-BP, ARF2, ORE14	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
GSVIVT01008950001	ARF17	Auxin response factor 17 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01021553001	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01025159001	ARF4	RNA biosynthesis.transcriptional activation.B3...	0.06	OrthoFinder output from all 47 species
GSVIVT01025691001	ARF16	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01035204001	ARF8, ATARF8	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
GSVIVT01035205001	ARF8, ATARF8	Auxin response factor 12 OS=Oryza sativa subsp. japonica	0.04	OrthoFinder output from all 47 species
LOC_Os02g06910.1	ARF6, LOC_Os02g06910	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os02g41800.1	ARF16, LOC_Os02g41800	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os04g43910.1	ARF10, LOC_Os04g43910	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os04g56850.1	MP, IAA24, ARF5,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os06g09660.1	ARF19, IAA22,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os06g46410.1	ARF6, LOC_Os06g46410	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Len_g10088	ARF10	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05750	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_122218g0010	ARF19, IAA22, ARF11	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
MA_127981g0010	ARF4	Auxin response factor 4 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_85955g0010	ARF19, IAA22, ARF11	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Mp1g12750.1	ARF6	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Msp_g15857	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g40947	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g11690	ARF6	transcriptional repressor *(IAA/AUX) & original description: none	0.05	OrthoFinder output from all 47 species
Smo437944	HSS, ARF1-BP, ARF2, ORE14	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
Solyc05g056040.3.1	ARF11, Solyc05g056040	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Solyc07g042260.4.1	ARF19, IAA22,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Spa_g29254	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003229_P002	ARF6, Zm00001e003229	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e006577_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e015164_P002	ARF10, Zm00001e015164	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e018126_P002	ARF6, Zm00001e018126	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e032423_P002	ARF3, ETT, Zm00001e032423	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Zm00001e041910_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
MF	GO:0015299	obsolete solute:proton antiporter activity	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	258	341
IPR003340	B3_DNA-bd	132	233
IPR033389	AUX/IAA_dom	989	1080

External Links

No external refs found!

Ceric.29G070000.1 (ARF6, Ceric.29G070000)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation