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  5. Ceric.30G044500.1

Ceric.30G044500.1 (Ceric.30G044500)


Aliases : Ceric.30G044500

Description : RNA chaperone *(RZ1) & original description: pacid=50608254 polypeptide=Ceric.30G044500.1.p locus=Ceric.30G044500 ID=Ceric.30G044500.1.v2.1 annot-version=v2.1


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.30G044500.1
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00251200 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00030p00132070 ATRZ-1A,... Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00154p00024620 GR-RBP3,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AT1G74230 GR-RBP5 glycine-rich RNA-binding protein 5 0.03 OrthoFinder output from all 47 species
AT3G23830 GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 0.02 OrthoFinder output from all 47 species
AT4G13850 GRP2, ATGRP2, GR-RBP2 glycine-rich RNA-binding protein 2 0.04 OrthoFinder output from all 47 species
AT5G61030 GR-RBP3 glycine-rich RNA-binding protein 3 0.06 OrthoFinder output from all 47 species
Adi_g111293 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117859 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22335 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07242 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21798 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g22712 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0008.g011258 CCR2, ATGRP7,... not classified & original description: CDS=99-740 0.03 OrthoFinder output from all 47 species
Cba_g05276 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g14006 ATRZ-1A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cre17.g729150 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g09825 GR-RBP4, GRP4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g10484 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g52563 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04232 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14326 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21349 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g30714 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021024001 GRP2, ATGRP2, GR-RBP2 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01033666001 No alias Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os03g47800.1 ATRZ-1A, LOC_Os03g47800 RNA chaperone (RZ1|GR-RBP) 0.04 OrthoFinder output from all 47 species
LOC_Os10g17454.1 GR-RBP3, LOC_Os10g17454 RNA editing factor (ORRM) 0.05 OrthoFinder output from all 47 species
Lfl_g05878 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29647 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10436424g0010 ATRZ-1A RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
MA_147273g0010 GR-RBP3 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species
MA_168323g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.05 OrthoFinder output from all 47 species
Ore_g33177 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03416 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c12_23410V3.1 GRP2, ATGRP2,... glycine-rich RNA-binding protein 3 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008411 No alias RNA chaperone *(RZ1) & original description: CDS=12-860 0.03 OrthoFinder output from all 47 species
Sam_g35045 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g104840.4.1 ATRZ-1A, Solyc01g104840 RNA chaperone (RZ1|GR-RBP) 0.06 OrthoFinder output from all 47 species
Solyc03g071560.4.1 Solyc03g071560 RNA chaperone (RZ1|GR-RBP) 0.04 OrthoFinder output from all 47 species
Solyc11g008210.3.1 Solyc11g008210 Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g10567 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g12557 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g16011 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22222 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g22687 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012278_P001 Zm00001e012278 RNA chaperone (RZ1|GR-RBP) 0.04 OrthoFinder output from all 47 species
Zm00001e028481_P002 GRP2, ATGRP2,... RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.04 OrthoFinder output from all 47 species
Zm00001e033010_P001 Zm00001e033010 RNA chaperone (RZ1|GR-RBP) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 77
IPR001878 Znf_CCHC 126 142
No external refs found!