Ceric.32G056500.1 (ARF16, Ceric.32G056500)

Aliases : ARF16, Ceric.32G056500

Description : ARF-type transcription factor & original description: pacid=50597542 polypeptide=Ceric.32G056500.1.p locus=Ceric.32G056500 ID=Ceric.32G056500.1.v2.1 annot-version=v2.1

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.32G056500.1
Cluster	HCCA: Cluster_158

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00061p00078220	ARF21,...	Putative auxin response factor 21 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Aev_g06750	ARF16	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0005.g009155	ARF6	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ehy_g15200	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os05g43920.1	ARF3, ETT, LOC_Os05g43920	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os10g33940.1	ARF16, LOC_Os10g33940	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Len_g10088	ARF10	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_10432349g0010	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
MA_69854g0010	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Pir_g26452	ARF10	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g50454	TIR5, MSG1,...	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g55179	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0140359	ABC-type transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	279	362
IPR003340	B3_DNA-bd	120	221

External Links

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Ceric.32G056500.1 (ARF16, Ceric.32G056500)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation