1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.35G017400.1

Ceric.35G017400.1 (RBCL, Ceric.35G017400)


Aliases : RBCL, Ceric.35G017400

Description : not classified & original description: pacid=50581736 polypeptide=Ceric.35G017400.1.p locus=Ceric.35G017400 ID=Ceric.35G017400.1.v2.1 annot-version=v2.1


Gene families : OG0002607 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002607_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.35G017400.1
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272640 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba 0.05 OrthoFinder output from all 47 species
AMTR_s00012p00184400 RBCL,... Ribulose bisphosphate carboxylase large chain... 0.05 OrthoFinder output from all 47 species
AMTR_s00606p00006850 RBCL,... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
ATCG00490 RBCL ribulose-bisphosphate carboxylases 0.19 OrthoFinder output from all 47 species
Aev_g01070 RBCL large subunit of ribulose-1,5-bisphosphat... 0.28 OrthoFinder output from all 47 species
Als_g11735 RBCL large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Cba_g06423 RBCL large subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Ceric.11G074700.1 RBCL, Ceric.11G074700 not classified & original description: pacid=50596717... 0.06 OrthoFinder output from all 47 species
Ceric.16G059900.1 RBCL, Ceric.16G059900 not classified & original description: pacid=50589806... 0.12 OrthoFinder output from all 47 species
Ceric.1Z018000.1 RBCL, Ceric.1Z018000 not classified & original description: pacid=50586374... 0.04 OrthoFinder output from all 47 species
Ceric.1Z141800.1 RBCL, Ceric.1Z141800 large subunit of ribulose-1,5-bisphosphat... 0.11 OrthoFinder output from all 47 species
Ceric.36G040400.1 RBCL, Ceric.36G040400 not classified & original description: pacid=50569251... 0.1 OrthoFinder output from all 47 species
GSVIVT01013856001 RBCL Ribulose bisphosphate carboxylase large chain (Fragment)... 0.04 OrthoFinder output from all 47 species
GSVIVT01022403001 RBCL Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban 0.03 OrthoFinder output from all 47 species
Gb_07644 RBCL Ribulose bisphosphate carboxylase large chain... 0.09 OrthoFinder output from all 47 species
Gb_15502 RBCL Ribulose bisphosphate carboxylase large chain... 0.09 OrthoFinder output from all 47 species
Gb_34523 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.06 OrthoFinder output from all 47 species
Gb_37464 RBCL Ribulose bisphosphate carboxylase large chain... 0.09 OrthoFinder output from all 47 species
LOC_Os01g58020.1 RBCL, LOC_Os01g58020 Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.09 OrthoFinder output from all 47 species
LOC_Os10g21268.1 RBCL, LOC_Os10g21268 large subunit of ribulose-1,5-bisphosphat... 0.14 OrthoFinder output from all 47 species
LOC_Os11g32770.1 LOC_Os11g32770 Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.06 OrthoFinder output from all 47 species
LOC_Os12g10580.1 RBCL, LOC_Os12g10580 component psRPS15 of small ribosomal subunit proteome 0.11 OrthoFinder output from all 47 species
Lfl_g07296 RBCL large subunit of ribulose-1,5-bisphosphat... 0.19 OrthoFinder output from all 47 species
Mp3g01300.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Ore_g01544 RBCL large subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Pir_g10235 RBCL large subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002257 RBCL not classified & original description: CDS=1-450 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0313.g027218 RBCL not classified & original description: CDS=1-270 0.06 OrthoFinder output from all 47 species
Sam_g02085 No alias large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Smo137874 RBCL Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.15 OrthoFinder output from all 47 species
Solyc00g500063.1.1 RBCL, Solyc00g500063 large subunit of ribulose-1,5-bisphosphat... 0.14 OrthoFinder output from all 47 species
Solyc07g021200.1.1 RBCL, Solyc07g021200 Ribulose bisphosphate carboxylase large chain (Fragment)... 0.1 OrthoFinder output from all 47 species
Solyc12g062550.1.1 RBCL, Solyc12g062550 Ribulose bisphosphate carboxylase large chain OS=Solanum... 0.08 OrthoFinder output from all 47 species
Solyc12g062560.1.1 RPOC1, Solyc12g062560 DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.07 OrthoFinder output from all 47 species
Zm00001e002755_P001 RBCL, Zm00001e002755 Ribulose bisphosphate carboxylase large chain OS=Zea... 0.03 OrthoFinder output from all 47 species
Zm00001e031080_P001 RBCL, Zm00001e031080 Ribulose bisphosphate carboxylase large chain OS=Zea... 0.14 OrthoFinder output from all 47 species
Zm00001e036792_P001 RBCL, Zm00001e036792 Ribulose bisphosphate carboxylase large chain OS=Zea... 0.02 OrthoFinder output from all 47 species
Zm00001e042029_P001 RBCL, Zm00001e042029 large subunit of ribulose-1,5-bisphosphat... 0.1 OrthoFinder output from all 47 species
Zm00001e042051_P001 RBCL, Zm00001e042051 large subunit of ribulose-1,5-bisphosphat... 0.1 OrthoFinder output from all 47 species
Zm00001e042083_P001 RBCL, Zm00001e042083 large subunit of ribulose-1,5-bisphosphat... 0.12 OrthoFinder output from all 47 species
Zm00001e042095_P001 RBCL, Zm00001e042095 large subunit of ribulose-1,5-bisphosphat... 0.12 OrthoFinder output from all 47 species
Zm00001e042403_P001 RBCL, Zm00001e042403 large subunit of ribulose-1,5-bisphosphat... 0.12 OrthoFinder output from all 47 species
Zm00001e042465_P001 RBCL, Zm00001e042465 Ribulose bisphosphate carboxylase large chain OS=Zea... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000685 RuBisCO_lsu_C 1 143
No external refs found!