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  5. Ceric.36G050300.1

Ceric.36G050300.1 (EMB140, Ceric.36G050300)


Aliases : EMB140, Ceric.36G050300

Description : not classified & original description: pacid=50568320 polypeptide=Ceric.36G050300.1.p locus=Ceric.36G050300 ID=Ceric.36G050300.1.v2.1 annot-version=v2.1


Gene families : OG0005015 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005015_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.36G050300.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00147110 EMB140,... No description available 0.04 OrthoFinder output from all 47 species
AT4G24270 EMB140 EMBRYO DEFECTIVE 140 0.08 OrthoFinder output from all 47 species
Adi_g061140 EMB140 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02511 EMB140 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g57460 EMB140 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g02313 EMB140 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08974 EMB140 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000961 EMB140 not classified & original description: CDS=38-2449 0.03 OrthoFinder output from all 47 species
Cre12.g546700 EMB140 No description available 0.02 OrthoFinder output from all 47 species
LOC_Os08g02130.2 EMB140, LOC_Os08g02130 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g10232 EMB140 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g42149 EMB140 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44100 EMB140 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo402481 EMB140 No description available 0.03 OrthoFinder output from all 47 species
Solyc01g102970.3.1 EMB140, Solyc01g102970 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Tin_g20226 EMB140 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e029180_P005 EMB140, Zm00001e029180 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR008669 LSM_interact 859 872
IPR000504 RRM_dom 685 753
No external refs found!