1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.38G065100.1

Ceric.38G065100.1 (ATR, ATRAD3, ATATR,...)


Aliases : ATR, ATRAD3, ATATR, Ceric.38G065100

Description : kinase component *(ATR) of ATR-ATRIP DNA damage sensor complex & original description: pacid=50579549 polypeptide=Ceric.38G065100.1.p locus=Ceric.38G065100 ID=Ceric.38G065100.1.v2.1 annot-version=v2.1


Gene families : OG0005221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005221_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.38G065100.1

Target Alias Description ECC score Gene Family Method Actions
AT5G40820 ATR, ATRAD3, ATATR Ataxia telangiectasia-mutated and RAD3-related 0.04 OrthoFinder output from all 47 species
Adi_g112857 ATR, ATRAD3, ATATR kinase component *(ATR) of ATR-ATRIP DNA damage sensor... 0.03 OrthoFinder output from all 47 species
Als_g34017 ATR, ATRAD3, ATATR kinase component *(ATR) of ATR-ATRIP DNA damage sensor... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000076.27 ATM, ATATM Protein modification.phosphorylation.atypical kinase... 0.02 OrthoFinder output from all 47 species
GSVIVT01023964001 ATR, ATRAD3, ATATR Protein modification.phosphorylation.atypical kinase... 0.04 OrthoFinder output from all 47 species
LOC_Os06g50910.3 ATR, ATRAD3,... DNA single-strand break response kinase (ATR). protein... 0.03 OrthoFinder output from all 47 species
Solyc01g111870.3.1 ATR, ATRAD3,... DNA single-strand break response kinase (ATR). protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR012993 UME 1169 1269
IPR003152 FATC_dom 2767 2798
IPR000403 PI3/4_kinase_cat_dom 2482 2727
IPR003151 PIK-rel_kinase_FAT 1880 2258
No external refs found!