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  5. Ceric.39G002300.1

Ceric.39G002300.1 (At-RSZ22a, RSZ22a,...)


Aliases : At-RSZ22a, RSZ22a, Ceric.39G002300

Description : RNA splicing factor *(RSZ21/22) & original description: pacid=50583192 polypeptide=Ceric.39G002300.1.p locus=Ceric.39G002300 ID=Ceric.39G002300.1.v2.1 annot-version=v2.1


Gene families : OG0001173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001173_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.39G002300.1

Target Alias Description ECC score Gene Family Method Actions
AT1G23860 RSZ21, At-RSZ21,... RS-containing zinc finger protein 21 0.04 OrthoFinder output from all 47 species
Cre09.g408200 At-RSZ22a, RSZ22a RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Dcu_g41811 At-RSZ22a, RSZ22a not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01033172001 At-RSZ22a, RSZ22a RNA processing.RNA splicing.spliceosome-associated... 0.05 OrthoFinder output from all 47 species
Gb_16463 At-RSZ22a, RSZ22a RSZ21/22 RNA splicing factor 0.05 OrthoFinder output from all 47 species
Len_g19889 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51937 At-RSZ22a, RSZ22a not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015077_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 100 115
IPR000504 RRM_dom 4 61
No external refs found!