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  5. Ceric.39G002700.1

Ceric.39G002700.1 (RAB1C, ATRAB1C,...)


Aliases : RAB1C, ATRAB1C, ATRABD2C, Ceric.39G002700

Description : D-class RAB GTPase & original description: pacid=50583454 polypeptide=Ceric.39G002700.1.p locus=Ceric.39G002700 ID=Ceric.39G002700.1.v2.1 annot-version=v2.1


Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.39G002700.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00145590 ATRAB1B, RABD2A,... Vesicle trafficking.regulation of membrane tethering and... 0.05 OrthoFinder output from all 47 species
AT4G17530 RAB1C, ATRAB1C, ATRABD2C RAB GTPase homolog 1C 0.03 OrthoFinder output from all 47 species
Adi_g010705 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g013330 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g08649 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g42380 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04170 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09984 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g13747 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023703 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: CDS=1-693 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001408.10 RAB1C, ATRAB1C, ATRABD2C Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Cre12.g560150 ATRAB1A, ATRABD2B, RAB1A Vesicle trafficking.regulation of membrane tethering and... 0.06 OrthoFinder output from all 47 species
Dcu_g23024 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35830 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g08450.1 ATRAB1B, RABD2A,... D-class RAB GTPase 0.05 OrthoFinder output from all 47 species
Lfl_g06900 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g22787 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g29131 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.06 OrthoFinder output from all 47 species
Mp3g00710.1 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase 0.06 OrthoFinder output from all 47 species
Msp_g29525 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g17943 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63621 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c10_190V3.1 ATRAB1B, RABD2A,... RAS 5 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014533 RAB1C, ATRAB1C, ATRABD2C not classified & original description: CDS=274-789 0.03 OrthoFinder output from all 47 species
Zm00001e015303_P001 ATRAB1B, RABD2A,... D-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Zm00001e027735_P001 RAB1C, ATRAB1C,... D-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Zm00001e029693_P001 RAB1C, ATRAB1C,... D-class RAB GTPase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 10 170
No external refs found!