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  5. Ceric.39G049600.1

Ceric.39G049600.1 (GRP2B, ATGRP2B,...)


Aliases : GRP2B, ATGRP2B, ATCSP4, Ceric.39G049600

Description : cold-responsive mRNA chaperone *(CSD) & original description: pacid=50582397 polypeptide=Ceric.39G049600.1.p locus=Ceric.39G049600 ID=Ceric.39G049600.1.v2.1 annot-version=v2.1


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.39G049600.1

Target Alias Description ECC score Gene Family Method Actions
Aop_g09578 No alias RNA chaperone (CSP) of mRNA quality control & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.10 No alias Cold shock protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g03692 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.06 OrthoFinder output from all 47 species
Lfl_g23689 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Mp1g04040.1 GRP2B, ATGRP2B, ATCSP4 RNA chaperone (CSP). mRNA chaperone (CSD) 0.03 OrthoFinder output from all 47 species
Pp3c5_7920V3.1 GRP2B, ATGRP2B,... cold shock domain protein 1 0.01 OrthoFinder output from all 47 species
Sam_g26933 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Spa_g00238 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0050290 sphingomyelin phosphodiesterase D activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 184 201
IPR001878 Znf_CCHC 148 162
IPR002059 CSP_DNA-bd 11 75
No external refs found!