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  5. Azfi_s0001.g000500

Azfi_s0001.g000500 (APUM8, PUM8)


Aliases : APUM8, PUM8

Description : not classified & original description: CDS=357-1181


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0001.g000500
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0091.g042856 APUM12, PUM12 not classified & original description: CDS=226-2520 0.07 OrthoFinder output from all 47 species
GSVIVT01009020001 PUM7, APUM7 Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os12g30520.1 APUM12, PUM12,... Pumilio homolog 12 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Sam_g27114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e024450_P001 APUM12, PUM12,... Pumilio homolog 12 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 179 213
IPR001313 Pumilio_RNA-bd_rpt 221 238
IPR001313 Pumilio_RNA-bd_rpt 34 61
IPR001313 Pumilio_RNA-bd_rpt 145 162
IPR001313 Pumilio_RNA-bd_rpt 1 27
IPR001313 Pumilio_RNA-bd_rpt 107 140
IPR001313 Pumilio_RNA-bd_rpt 73 102
No external refs found!