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  5. Azfi_s0001.g000688

Azfi_s0001.g000688


Description : not classified & original description: CDS=1-3246


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0001.g000688

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00232p00000850 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g21090... 0.04 OrthoFinder output from all 47 species
Als_g14142 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18332 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28650 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g29672 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g19602 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g14560 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037258001 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.04 OrthoFinder output from all 47 species
Gb_14392 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.12 OrthoFinder output from all 47 species
Len_g05421 CRR22 not classified & original description: none 0.08 OrthoFinder output from all 47 species
MA_210823g0010 EMB2261 Pentatricopeptide repeat-containing protein At4g37170... 0.04 OrthoFinder output from all 47 species
MA_724726g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Msp_g25127 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g41366 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g47042 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g13245 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g64818 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g13846 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g22160 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g32088 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g02108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo82255 CRR2 Pentatricopeptide repeat-containing protein At4g33990... 0.06 OrthoFinder output from all 47 species
Solyc02g084830.4.1 Solyc02g084830 Pentatricopeptide repeat-containing protein At5g44230... 0.04 OrthoFinder output from all 47 species
Tin_g30416 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 798 820
IPR002885 Pentatricopeptide_repeat 211 240
IPR002885 Pentatricopeptide_repeat 388 412
IPR002885 Pentatricopeptide_repeat 592 616
IPR002885 Pentatricopeptide_repeat 694 721
IPR002885 Pentatricopeptide_repeat 76 99
IPR002885 Pentatricopeptide_repeat 414 460
IPR002885 Pentatricopeptide_repeat 515 562
IPR002885 Pentatricopeptide_repeat 824 871
IPR002885 Pentatricopeptide_repeat 618 664
IPR002885 Pentatricopeptide_repeat 102 149
IPR002885 Pentatricopeptide_repeat 311 358
No external refs found!