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  5. Azfi_s0004.g008305

Azfi_s0004.g008305 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : ssDNA-binding protein *(OSB) & original description: CDS=82-2724


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0004.g008305

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00259620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g35030,... 0.04 OrthoFinder output from all 47 species
AMTR_s00016p00259690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g46460,... 0.03 OrthoFinder output from all 47 species
AMTR_s00040p00174700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00099p00097640 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 OrthoFinder output from all 47 species
AMTR_s00439p00011030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.05 OrthoFinder output from all 47 species
AT3G46790 CRR2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g005291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036795 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082454 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g099291 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g110646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11263 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13967 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16839 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23789 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18268 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g46291 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g05308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27910 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01654.t1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene04185.t1 Aspi01Gene04185 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19500.t2 Aspi01Gene19500 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene19894.t1 Aspi01Gene19894 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene27322.t1 Aspi01Gene27322 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36332.t2 Aspi01Gene36332 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene54509.t1 Aspi01Gene54509 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene61369.t1 CRR22, Aspi01Gene61369 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65182.t1 OTP86, Aspi01Gene65182 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene66051.t1 OTP84, Aspi01Gene66051 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0059.g034666 No alias not classified & original description: CDS=1-1770 0.05 OrthoFinder output from all 47 species
Azfi_s0090.g042642 No alias not classified & original description: CDS=39-695 0.03 OrthoFinder output from all 47 species
Cba_g20878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g31685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67909 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g76573 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.10G046000.1 CRR22, Ceric.10G046000 ssDNA-binding protein *(OSB) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.10G047500.1 Ceric.10G047500 not classified & original description: pacid=50612222... 0.03 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.03 OrthoFinder output from all 47 species
Ceric.22G020200.1 Ceric.22G020200 not classified & original description: pacid=50615278... 0.04 OrthoFinder output from all 47 species
Ceric.29G083600.1 Ceric.29G083600 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g05782 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07645 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36299 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g42122 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008656001 No alias Pentatricopeptide repeat-containing protein At5g50990... 0.03 OrthoFinder output from all 47 species
GSVIVT01015233001 EMB2261 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Gb_34736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
LOC_Os09g07780.1 OTP84, LOC_Os09g07780 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Len_g01885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09617 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17363 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g32845 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g33724 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g34928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06634 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25822 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10431227g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_123466g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_9526611g0020 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Msp_g05393 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g20858 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g24471 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28224 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g30589 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31656 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g36270 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41053 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43552 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27846 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g30106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12561 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g15973 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g60415 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g60422 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63647 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63895 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g59920 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g62956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002433 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g003970 No alias not classified & original description: CDS=1-3009 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006149 No alias not classified & original description: CDS=1-2199 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007299 No alias not classified & original description: CDS=1-3327 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009138 No alias component *(NRPC16/RPC34) of TFIIIe transcription factor... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0049.g013695 No alias not classified & original description: CDS=1-2949 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0086.g018405 No alias not classified & original description: CDS=1-2268 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0117.g021127 No alias not classified & original description: CDS=28-1563 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0124.g021578 MEF19 not classified & original description: CDS=1-1950 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0151.g023411 REME1 not classified & original description: CDS=1-1494 0.03 OrthoFinder output from all 47 species
Sam_g08403 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36251 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo92008 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 OrthoFinder output from all 47 species
Tin_g06121 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13178 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17781 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17876 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26504 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e015440_P001 CRR22, Zm00001e015440 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Zm00001e021453_P001 CRR28, Zm00001e021453 Pentatricopeptide repeat-containing protein At5g06540... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 50 97
IPR002885 Pentatricopeptide_repeat 255 301
IPR002885 Pentatricopeptide_repeat 356 403
IPR002885 Pentatricopeptide_repeat 152 199
IPR002885 Pentatricopeptide_repeat 459 505
IPR002885 Pentatricopeptide_repeat 229 251
IPR002885 Pentatricopeptide_repeat 25 48
IPR002885 Pentatricopeptide_repeat 433 455
IPR002885 Pentatricopeptide_repeat 127 147
IPR002885 Pentatricopeptide_repeat 534 558
IPR032867 DYW_dom 683 773
No external refs found!