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  5. Azfi_s0007.g010976

Azfi_s0007.g010976


Description : not classified & original description: CDS=261-1286


Gene families : OG0000715 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000715_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0007.g010976

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00197820 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00061p00142700 ATRBP31, CP31,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00166p00060690 ATRBP31, CP31,... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT2G37220 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
AT3G52150 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
AT3G53460 CP29 chloroplast RNA-binding protein 29 0.03 OrthoFinder output from all 47 species
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.03 OrthoFinder output from all 47 species
Adi_g053286 CP31B not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.05 OrthoFinder output from all 47 species
Gb_29798 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os02g57010.1 LOC_Os02g57010 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g25960.1 LOC_Os03g25960 RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g50110.1 LOC_Os04g50110 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os07g43810.1 LOC_Os07g43810 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
LOC_Os09g10760.1 LOC_Os09g10760 component psPSRP2 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
MA_320479g0010 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Mp3g24820.1 CP31B RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Ore_g03561 CP31B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06962 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g11334 CP31B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02835 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021464 CP31B not classified & original description: CDS=19-840 0.04 OrthoFinder output from all 47 species
Solyc01g006940.4.1 PDE322, CP33,... 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.06 OrthoFinder output from all 47 species
Solyc03g111840.3.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.06 OrthoFinder output from all 47 species
Solyc04g074750.3.1 Solyc04g074750 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Solyc08g076840.3.1 Solyc08g076840 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
Solyc09g007850.3.1 Solyc09g007850 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Solyc09g090960.4.1 Solyc09g090960 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Solyc10g086150.2.1 Solyc10g086150 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Spa_g07687 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08465 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001824_P002 Zm00001e001824 RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e003947_P001 ATRBP31, CP31,... RNA editing factor (CP31) 0.04 OrthoFinder output from all 47 species
Zm00001e010844_P001 Zm00001e010844 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Zm00001e022086_P002 ATRBP31, CP31,... RNA editing factor (CP31) 0.03 OrthoFinder output from all 47 species
Zm00001e032835_P001 PDE322, CP33,... RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e033465_P001 ATRBP31, CP31,... RNA editing factor (CP31) 0.02 OrthoFinder output from all 47 species
Zm00001e033636_P003 Zm00001e033636 component psPSRP2 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e035630_P001 Zm00001e035630 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 226 288
IPR000504 RRM_dom 122 184
No external refs found!